PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G087600.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 380aa    MW: 42812.9 Da    PI: 8.0682
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G087600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11310356455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  Prupe.5G087600.4.p 310 NHVEAERQRREKLNHRFYLLRSVVPNV-----SKMDRSSLLADAVAYINQLK 356
                         799***********************6.....5*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.3E-3822212IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.62E-16304369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-13304360No hitNo description
PROSITE profilePS5088815.688306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-15310368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9310355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-14312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEAIISSCSS PNFCQENLGT FQQRLQFIFQ NRPEWWLYWI FWQSSKDSND QVSLSWAAGD  60
FRVNSDLASK RNNKVSNNHQ PKFGFNKKVT SREAEEALFD EDMADLEMRL VDHEDVTESE  120
WFYFYSVSLT QSFAAGHATN NILGRAFCSG GFVWLAGAHE LQFYECERVK EARMHGIQTL  180
VCIATPCGVL ELASLDVIKE DWGFVHLSKS LFGSDNNNNN NRVSQQKGSR EGNVLAPLLA  240
NGIFSGSQKE LTRQAAGTKE AAPFNIGGSS PESLSGSVGN FTCENTGNTR SKKRRRSSNN  300
GASRESSLLN HVEAERQRRE KLNHRFYLLR SVVPNVSKMD RSSLLADAVA YINQLKAKVE  360
ELELKTQAQP QNPKKWKWM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-23152123192Transcription factor MYC3
4rqw_B4e-23152123192Transcription factor MYC3
4rs9_A4e-23152123192Transcription factor MYC3
4yz6_A4e-23152123192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238754.10.0PREDICTED: transcription factor MYC4-like isoform X1
TrEMBLM5WX790.0M5WX79_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s11400.12e-95(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-44bHLH family protein